Search Results - "Wakefield, Matthew"

Journal Article

Gene ontology analysis for RNA-seq: accounting for selection bias

by Young, Matthew D Wakefield, Matthew J Smyth, Gordon K Oshlack, Alicia Published in Genome biology (2010-00-00)

“...We present GOseq, an application for performing Gene Ontology (GO) analysis on RNA-seq data. GO analysis is widely used to reduce complexity and highlight...”

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Journal Article

Transcript length bias in RNA-seq data confounds systems biology

by Oshlack, Alicia Wakefield, Matthew J Published in Biology direct (16.04.2009)

“...Several recent studies have demonstrated the effectiveness of deep sequencing for transcriptome analysis (RNA-seq) in mammals. As RNA-seq becomes more...”

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Journal Article

Consumption Responses to a Large Shock to Financial Wealth: Evidence from Italy

by Bottazzi, Renata Trucchi, Serena Wakefield, Matthew Published in The Scandinavian journal of economics (01.04.2020)

“...We estimate marginal propensities to consume from wealth shocks. We exploit large asset‐price shocks in 2007–2008 and household‐level panel data to implement...”

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Journal Article

Targeting DNA repair: the genome as a potential biomarker

by Nesic, Ksenija Wakefield, Matthew Kondrashova, Olga Scott, Clare L McNeish, Iain A Published in The Journal of pathology (01.04.2018)

“...Genomic instability and mutations are fundamental aspects of human malignancies, leading to progressive accumulation of the hallmarks of cancer. For some time,...”

Journal Article

The Lonfearn Member, Lealt Shale Formation, (Middle Jurassic) of the Inner Hebrides, Scotland

by Hudson, John D Wakefield, Matthew I Published in Scottish journal of geology (15.05.2018)

“...The Lonfearn Member, Lealt Shale Formation, is a distinctive unit within the Great Estuarine Group in the Middle Jurassic of the Inner Hebrides, Scotland. Its...”

Journal Article

Can temptation explain housing choices over the life cycle?

by Angelini, Viola Bucciol, Alessano Wakefield, Matthew Weber, Guglielmo Published in The Manchester school (01.03.2020)

“...We use individual life history data from 12 European countries, and duration analysis that controls for unobserved heterogeneity, to investigate whether...”

Journal Article

RNA-seq of Isolated Chromaffin Cells Highlights the Role of Sex-Linked and Imprinted Genes in Adrenal Medulla Development

by Chan, Wing Hei Komada, Masayuki Fukushima, Toshiaki Southard-Smith, E Michelle Anderson, Colin R Wakefield, Matthew J Published in Scientific reports (08.03.2019)

“...Adrenal chromaffin cells and sympathetic neurons synthesize and release catecholamines, and both cell types are derived from neural crest precursors. However,...”

Journal Article

Two of a kind: transmissible Schwann cell cancers in the endangered Tasmanian devil (Sarcophilus harrisii)

by Patchett, Amanda L Coorens, Tim H H Darby, Jocelyn Wilson, Richard McKay, Matthew J Kamath, Karthik S Rubin, Alan Wakefield, Matthew Mcintosh, Lachlan Mangiola, Stefano Pye, Ruth J Flies, Andrew S Corcoran, Lynn M Lyons, A Bruce Woods, Gregory M Murchison, Elizabeth P Papenfuss, Anthony T Tovar, Cesar Published in Cellular and molecular life sciences : CMLS (01.05.2020)

“...Devil facial tumour disease (DFTD) comprises two genetically distinct transmissible cancers (DFT1 and DFT2) endangering the survival of the Tasmanian devil...”

Journal Article

PyCogent: a toolkit for making sense from sequence

by Knight, Rob Maxwell, Peter Birmingham, Amanda Carnes, Jason Caporaso, J Gregory Easton, Brett C Eaton, Michael Hamady, Micah Lindsay, Helen Liu, Zongzhi Lozupone, Catherine McDonald, Daniel Robeson, Michael Sammut, Raymond Smit, Sandra Wakefield, Matthew J Widmann, Jeremy Wikman, Shandy Wilson, Stephanie Ying, Hua Huttley, Gavin A Published in Genome biology (2007-00-00)

“...We have implemented in Python the COmparative GENomic Toolkit, a fully integrated and thoroughly tested framework for novel probabilistic analyses of...”

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Smchd1 regulates a subset of autosomal genes subject to monoallelic expression in addition to being critical for X inactivation

by Mould, Arne W Pang, Zhenyi Pakusch, Miha Tonks, Ian D Stark, Mitchell Carrie, Dianne Mukhopadhyay, Pamela Seidel, Annica Ellis, Jonathan J Deakin, Janine Wakefield, Matthew J Krause, Lutz Blewitt, Marnie E Kay, Graham F Published in Epigenetics & chromatin (02.07.2013)

“...Smchd1 is an epigenetic modifier essential for X chromosome inactivation: female embryos lacking Smchd1 fail during midgestational development. Male mice are...”

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Journal Article

Radioactive Seed Localization Program for Patients With Nonpalpable Breast Lesions

by Burroughs, Judy Fencl, Jennifer L Wakefield, Matthew C Published in AORN journal (01.06.2017)

“...Abstract Without early diagnosis and treatment, many lives are lost to breast cancer. Increased breast cancer awareness has facilitated research to guide...”

Journal Article

First-time House Buying and Catch-up: A Cohort Study

by Renata Bottazzi Thomas F. Crossley Matthew Wakefield Published in Economica (London) (01.12.2015)

“...We investigate whether different ages of first-time house buying lead to persistent differences in homeownership between cohorts. Our data span nearly 40 years...”

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Journal Article

AmpliVar: Mutation Detection in High‐Throughput Sequence from Amplicon‐Based Libraries

by Hsu, Arthur L Kondrashova, Olga Lunke, Sebastian Love, Clare J Meldrum, Cliff Marquis‐Nicholson, Renate Corboy, Greg Pham, Kym Wakefield, Matthew Waring, Paul M Taylor, Graham R Published in Human mutation (01.04.2015)

“...ABSTRACT Conventional means of identifying variants in high‐throughput sequencing align each read against a reference sequence, and then call variants at each...”

Journal Article

Involvement of PatE, a Prophage-Encoded AraC-Like Regulator, in the Transcriptional Activation of Acid Resistance Pathways of Enterohemorrhagic Escherichia coli Strain EDL933

by Jennifer K. Bender Judyta Praszkier Matthew J. Wakefield Kathryn Holt Marija Tauschek Roy M. Robins-Browne Ji Yang Published in Applied and Environmental Microbiology (01.08.2012)

“...Classifications Services AEM Citing Articles Google Scholar PubMed Related Content Social Bookmarking CiteULike Delicious Digg Facebook Google+ Mendeley Reddit...”

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Journal Article

DNA repair processes are critical mediators of p53-dependent tumor suppression

by Janic, Ana Valente, Liz J Wakefield, Matthew J Di Stefano, Leon Milla, Liz Wilcox, Stephen Yang, Haoyu Tai, Lin Vandenberg, Cassandra J Kueh, Andrew J Mizutani, Shinsuke Brennan, Margs S Schenk, Robyn L Lindqvist, Lisa M Papenfuss, Anthony T O'Connor, Liam Strasser, Andreas Herold, Marco J Published in Nature medicine (01.07.2018)

“...It has long been assumed that p53 suppresses tumor development through induction of apoptosis, possibly with contributions by cell cycle arrest and cell...”

Journal Article

Modelling the demand for housing over the life cycle

by Attanasio, Orazio P Bottazzi, Renata Low, Hamish W Nesheim, Lars Wakefield, Matthew Published in Review of economic dynamics (2012)

“...We model individual demand for housing over the life cycle, and show the aggregate implications of this behaviour. Individuals delay purchasing their first...”

Journal Article

So you want to be an eye surgeon?

by Swampillai, Andrew Wakefield, Matthew Published in BMJ (24.10.2013)

“...Combine the skills of a physician and a surgeon...”

Journal Article

A second-generation anchored genetic linkage map of the tammar wallaby (Macropus eugenii)

by Wang, Chenwei Webley, Lee Wei, Ke-jun Wakefield, Matthew J Patel, Hardip R Deakin, Janine E Alsop, Amber Marshall Graves, Jennifer A Cooper, Desmond W Nicholas, Frank W Zenger, Kyall R Published in BMC genetics (19.08.2011)

“...The tammar wallaby, Macropus eugenii, a small kangaroo used for decades for studies of reproduction and metabolism, is the model Australian marsupial for...”

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Journal Article

Smiling to tolerate distress: The moderating role of attention to emotion

by Chung, Jason J Wakefield, Matthew A Austin, Sara B Chapman, Alexander L Published in Canadian journal of behavioural science (01.01.2021)

“...Deficits in distress tolerance and heightened attention to emotion (ATE) have been linked to borderline personality disorder (BPD). Research has suggested that...”

Journal Article

Oocytes can efficiently repair DNA double-strand breaks to restore genetic integrity and protect offspring health

by Stringer, Jessica M Winship, Amy Zerafa, Nadeen Wakefield, Matthew Hutt, Karla Published in Proceedings of the National Academy of Sciences - PNAS (26.05.2020)

“...Female fertility and offspring health are critically dependent on an adequate supply of high-quality oocytes, the majority of which are maintained in the...”

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